Detailed information of SNP:
|
SNP ID:
sf0701923179(Gbrowse)
Chromosome: chr07 Position: 1923179 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 52.09% | 47.91% |
| All Indica | 795 | 27.17% | 72.83% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 64 | 15.62% | 84.38% |
| Indica I | 374 | 2.67% | 97.33% |
| Indica II | 211 | 76.78% | 23.22% |
| Indica Intermediate | 210 | 20.95% | 79.05% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701923179 | T->C | INTERGENIC | None |