Detailed information of SNP:
|
SNP ID:
sf0701929998(Gbrowse)
Chromosome: chr07 Position: 1929998 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 51.42% | 48.58% |
| All Indica | 798 | 27.07% | 72.93% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 62 | 3.23% | 96.77% |
| Indica I | 375 | 1.60% | 98.40% |
| Indica II | 212 | 77.36% | 22.64% |
| Indica Intermediate | 211 | 21.80% | 78.20% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701929998 | T->C | INTERGENIC | None |