Detailed information of SNP:
|
SNP ID:
sf0701936368(Gbrowse)
Chromosome: chr07 Position: 1936368 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 53.99% | 46.01% |
| All Indica | 798 | 27.07% | 72.93% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 66 | 42.42% | 57.58% |
| Indica I | 374 | 1.07% | 98.93% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 23.22% | 76.78% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701936368 | C->A | INTERGENIC | None |