Detailed information of SNP:
|
SNP ID:
sf0701994363(Gbrowse)
Chromosome: chr07 Position: 1994363 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 53.49% | 46.51% |
| All Indica | 799 | 28.29% | 71.71% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 1.87% | 98.13% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 24.64% | 75.36% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0701994363 | G->T | INTERGENIC | None |