Detailed information of SNP:



SNP ID: sf0702101053(Gbrowse)

Chromosome: chr07

Position: 2101053
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 98.73% 1.27%
All Indica799 100.00% 0.00%
All Japonica497 96.58% 3.42%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 95.22% 4.78%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0702101053 C->T LOC_Os07g04730(LOC_Os07g04730.1) INTRON