Detailed information of SNP:
|
SNP ID:
sf0702122214(Gbrowse)
Chromosome: chr07 Position: 2122214 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 95.34% | 4.66% |
| All Indica | 780 | 98.21% | 1.79% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 62 | 20.97% | 79.03% |
| Indica I | 371 | 98.65% | 1.35% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 196 | 96.43% | 3.57% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702122214 | G->A | LOC_Os07g04780(LOC_Os07g04780.1) | INTRON |