Detailed information of SNP:
|
SNP ID:
sf0702152430(Gbrowse)
Chromosome: chr07 Position: 2152430 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 51.55% | 48.45% |
| All Indica | 799 | 24.41% | 75.59% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 1.87% | 98.13% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 211 | 23.22% | 76.78% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702152430 | G->A | INTERGENIC | None |