Detailed information of SNP:
|
SNP ID:
sf0702241562(Gbrowse)
Chromosome: chr07 Position: 2241562 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 51.62% | 48.38% |
| All Indica | 798 | 17.04% | 82.96% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 374 | 2.67% | 97.33% |
| Indica II | 213 | 38.03% | 61.97% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702241562 | A->C | INTERGENIC | None |