Detailed information of SNP:
|
SNP ID:
sf0702256413(Gbrowse)
Chromosome: chr07 Position: 2256413 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 52.44% | 47.56% |
| All Indica | 797 | 82.56% | 17.44% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 213 | 58.69% | 41.31% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702256413 | C->A | LOC_Os07g05110(LOC_Os07g05110.1) | Synonymous |