Detailed information of SNP:
|
SNP ID:
sf0702282956(Gbrowse)
Chromosome: chr07 Position: 2282956 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1214 | 83.61% | 16.39% |
| All Indica | 786 | 89.44% | 10.56% |
| All Japonica | 314 | 68.15% | 31.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 202 | 67.82% | 32.18% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 200 | 93.00% | 7.00% |
| Tropical Japonica | 69 | 13.04% | 86.96% |
| Japonica Intermediate | 45 | 42.22% | 57.78% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 35 | 82.86% | 17.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702282956 | G->A | INTERGENIC | None |