Detailed information of SNP:
|
SNP ID:
sf0702307498(Gbrowse)
Chromosome: chr07 Position: 2307498 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 51.34% | 48.66% |
| All Indica | 798 | 16.79% | 83.21% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 4.28% | 95.72% |
| Indica II | 213 | 40.38% | 59.62% |
| Indica Intermediate | 211 | 15.17% | 84.83% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702307498 | A->T | INTERGENIC | None |