Detailed information of SNP:
|
SNP ID:
sf0702354372(Gbrowse)
Chromosome: chr07 Position: 2354372 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 86.36% | 13.64% |
| All Indica | 794 | 91.69% | 8.31% |
| All Japonica | 457 | 78.77% | 21.23% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 85.71% | 14.29% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 311 | 92.28% | 7.72% |
| Tropical Japonica | 84 | 46.43% | 53.57% |
| Japonica Intermediate | 62 | 54.84% | 45.16% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702354372 | C->T | INTERGENIC | None |