Detailed information of SNP:
|
SNP ID:
sf0702357820(Gbrowse)
Chromosome: chr07 Position: 2357820 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 96.17% | 3.83% |
| All Indica | 767 | 93.35% | 6.65% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 367 | 94.55% | 5.45% |
| Indica II | 200 | 95.00% | 5.00% |
| Indica Intermediate | 200 | 89.50% | 10.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702357820 | G->A | INTERGENIC | None |