Detailed information of SNP:
|
SNP ID:
sf0702432303(Gbrowse)
Chromosome: chr07 Position: 2432303 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 97.21% | 2.79% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 482 | 92.32% | 7.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 98.49% | 1.51% |
| Tropical Japonica | 83 | 72.29% | 27.71% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702432303 | C->T | LOC_Os07g05330(LOC_Os07g05330.1) | Non-Synonymous SNP |