Detailed information of SNP:
|
SNP ID:
sf0702436437(Gbrowse)
Chromosome: chr07 Position: 2436437 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1361 | 95.15% | 4.85% |
| All Indica | 786 | 99.62% | 0.38% |
| All Japonica | 454 | 86.56% | 13.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 100.00% | 0.00% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 309 | 90.29% | 9.71% |
| Tropical Japonica | 86 | 76.74% | 23.26% |
| Japonica Intermediate | 59 | 81.36% | 18.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702436437 | T->C | INTERGENIC | None |