Detailed information of SNP:
|
SNP ID:
sf0702444856(Gbrowse)
Chromosome: chr07 Position: 2444856 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 55.25% | 44.75% |
| All Indica | 790 | 87.47% | 12.53% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 82.21% | 17.79% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 208 | 91.35% | 8.65% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702444856 | T->A | INTERGENIC | None |