Detailed information of SNP:
|
SNP ID:
sf0702444863(Gbrowse)
Chromosome: chr07 Position: 2444863 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 96.44% | 3.56% |
| All Indica | 785 | 94.65% | 5.35% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 42 | 83.33% | 16.67% |
| Indica I | 365 | 95.89% | 4.11% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 207 | 92.27% | 7.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702444863 | A->T | INTERGENIC | None |