Detailed information of SNP:
|
SNP ID:
sf0702446743(Gbrowse)
Chromosome: chr07 Position: 2446743 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 56.67% | 43.33% |
| All Indica | 797 | 89.46% | 10.54% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 82.89% | 17.11% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702446743 | G->A | INTERGENIC | None |