Detailed information of SNP:
|
SNP ID:
sf0702474951(Gbrowse)
Chromosome: chr07 Position: 2474951 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 56.53% | 43.47% |
| All Indica | 798 | 88.97% | 11.03% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 82.09% | 17.91% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702474951 | A->G | INTERGENIC | None |