Detailed information of SNP:
|
SNP ID:
sf0702502502(Gbrowse)
Chromosome: chr07 Position: 2502502 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 57.92% | 42.08% |
| All Indica | 796 | 90.20% | 9.80% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 83.65% | 16.35% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702502502 | T->G | LOC_Os07g05440(LOC_Os07g05440.1) | SNPs that introduce initiation codons |
| sf0702502502 | T->G | LOC_Os07g05440(LOC_Os07g05440.2) | INTRON |