Detailed information of SNP:
|
SNP ID:
sf0702523728(Gbrowse)
Chromosome: chr07 Position: 2523728 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 50.95% | 49.05% |
| All Indica | 798 | 86.84% | 13.16% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 80.48% | 19.52% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702523728 | G->A | INTERGENIC | None |