Detailed information of SNP:
|
SNP ID:
sf0702529648(Gbrowse)
Chromosome: chr07 Position: 2529648 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 52.33% | 47.67% |
| All Indica | 799 | 89.61% | 10.39% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 82.93% | 17.07% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702529648 | C->G | INTERGENIC | None |