Detailed information of SNP:
|
SNP ID:
sf0702550780(Gbrowse)
Chromosome: chr07 Position: 2550780 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 52.01% | 47.99% |
| All Indica | 799 | 89.24% | 10.76% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 82.93% | 17.07% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702550780 | C->T | INTERGENIC | None |