Detailed information of SNP:
|
SNP ID:
sf0702563993(Gbrowse)
Chromosome: chr07 Position: 2563993 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 56.94% | 43.06% |
| All Indica | 799 | 89.49% | 10.51% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 83.20% | 16.80% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702563993 | A->G | INTERGENIC | None |