Detailed information of SNP:
|
SNP ID:
sf0702565309(Gbrowse)
Chromosome: chr07 Position: 2565309 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 52.05% | 47.95% |
| All Indica | 798 | 89.47% | 10.53% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 82.93% | 17.07% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702565309 | G->A | LOC_Os07g05500(LOC_Os07g05500.1) | INTRON |