Detailed information of SNP:
|
SNP ID:
sf0702565843(Gbrowse)
Chromosome: chr07 Position: 2565843 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.59% | 43.41% |
| All Indica | 799 | 89.11% | 10.89% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 82.67% | 17.33% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702565843 | C->T | LOC_Os07g05500(LOC_Os07g05500.1) | INTRON |