Detailed information of SNP:
|
SNP ID:
sf0702585804(Gbrowse)
Chromosome: chr07 Position: 2585804 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.73% | 43.27% |
| All Indica | 799 | 88.86% | 11.14% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 82.13% | 17.87% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702585804 | T->C | LOC_Os07g05540(LOC_Os07g05540.1) | INTRON |