Detailed information of SNP:
|
SNP ID:
sf0702606574(Gbrowse)
Chromosome: chr07 Position: 2606574 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.47% | 44.53% |
| All Indica | 799 | 87.11% | 12.89% |
| All Japonica | 495 | 0.81% | 99.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 76.53% | 23.47% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702606574 | G->A | INTERGENIC | None |