Detailed information of SNP:
|
SNP ID:
sf0702606803(Gbrowse)
Chromosome: chr07 Position: 2606803 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 55.54% | 44.46% |
| All Indica | 799 | 87.11% | 12.89% |
| All Japonica | 495 | 1.01% | 98.99% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 76.53% | 23.47% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702606803 | T->C | INTERGENIC | None |