Detailed information of SNP:
|
SNP ID:
sf0702641155(Gbrowse)
Chromosome: chr07 Position: 2641155 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 51.87% | 48.13% |
| All Indica | 799 | 80.48% | 19.52% |
| All Japonica | 496 | 0.81% | 99.19% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 70.67% | 29.33% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702641155 | A->G | INTERGENIC | None |