Detailed information of SNP:
|
SNP ID:
sf0702668542(Gbrowse)
Chromosome: chr07 Position: 2668542 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1369 | 82.40% | 17.60% |
| All Indica | 789 | 99.49% | 0.51% |
| All Japonica | 457 | 48.58% | 51.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 313 | 30.03% | 69.97% |
| Tropical Japonica | 84 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 73.33% | 26.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702668542 | C->G | INTERGENIC | None |