Detailed information of SNP:
|
SNP ID:
sf0702671534(Gbrowse)
Chromosome: chr07 Position: 2671534 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1359 | 87.20% | 12.80% |
| All Indica | 790 | 99.49% | 0.51% |
| All Japonica | 446 | 62.11% | 37.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 304 | 45.07% | 54.93% |
| Tropical Japonica | 84 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 96.55% | 3.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702671534 | C->T | INTERGENIC | None |