Detailed information of SNP:
|
SNP ID:
sf0702695813(Gbrowse)
Chromosome: chr07 Position: 2695813 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 57.48% | 42.52% |
| All Indica | 792 | 27.02% | 72.98% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 31.18% | 68.82% |
| Indica II | 211 | 14.69% | 85.31% |
| Indica Intermediate | 209 | 32.06% | 67.94% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702695813 | T->C | LOC_Os07g05660(LOC_Os07g05660.1) | INTRON |