Detailed information of SNP:
|
SNP ID:
sf0702824531(Gbrowse)
Chromosome: chr07 Position: 2824531 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 92.77% | 7.23% |
| All Indica | 777 | 87.26% | 12.74% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 78.21% | 21.79% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 207 | 90.34% | 9.66% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702824531 | G->C | LOC_Os07g05880(LOC_Os07g05880.2) | Non-Synonymous SNP |
| sf0702824531 | G->C | LOC_Os07g05880(LOC_Os07g05880.1) | Non-Synonymous SNP |