Detailed information of SNP:
|
SNP ID:
sf0702835417(Gbrowse)
Chromosome: chr07 Position: 2835417 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1293 | 50.19% | 49.81% |
| All Indica | 730 | 78.63% | 21.37% |
| All Japonica | 450 | 9.33% | 90.67% |
| Aus | 62 | 9.68% | 90.32% |
| Indica I | 341 | 73.02% | 26.98% |
| Indica II | 192 | 85.94% | 14.06% |
| Indica Intermediate | 197 | 81.22% | 18.78% |
| Temperate Japonica | 312 | 6.41% | 93.59% |
| Tropical Japonica | 76 | 19.74% | 80.26% |
| Japonica Intermediate | 62 | 11.29% | 88.71% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 37 | 45.95% | 54.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702835417 | T->C | INTERGENIC | None |