Detailed information of SNP:
|
SNP ID:
sf0702844696(Gbrowse)
Chromosome: chr07 Position: 2844696 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1284 | 81.70% | 18.30% |
| All Indica | 703 | 67.85% | 32.15% |
| All Japonica | 470 | 99.79% | 0.21% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 322 | 71.43% | 28.57% |
| Indica II | 194 | 58.25% | 41.75% |
| Indica Intermediate | 187 | 71.66% | 28.34% |
| Temperate Japonica | 325 | 99.69% | 0.31% |
| Tropical Japonica | 81 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 35 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702844696 | A->G | INTERGENIC | None |