Detailed information of SNP:
|
SNP ID:
sf0702868916(Gbrowse)
Chromosome: chr07 Position: 2868916 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1353 | 94.90% | 5.10% |
| All Indica | 746 | 91.69% | 8.31% |
| All Japonica | 484 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 99.45% | 0.55% |
| Indica II | 186 | 79.03% | 20.97% |
| Indica Intermediate | 196 | 89.29% | 10.71% |
| Temperate Japonica | 328 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702868916 | C->T | INTERGENIC | None |