Detailed information of SNP:
|
SNP ID:
sf0702898417(Gbrowse)
Chromosome: chr07 Position: 2898417 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1323 | 70.07% | 29.93% |
| All Indica | 754 | 59.55% | 40.45% |
| All Japonica | 454 | 85.02% | 14.98% |
| Aus | 62 | 87.10% | 12.90% |
| Indica I | 349 | 51.29% | 48.71% |
| Indica II | 202 | 64.36% | 35.64% |
| Indica Intermediate | 203 | 68.97% | 31.03% |
| Temperate Japonica | 306 | 91.83% | 8.17% |
| Tropical Japonica | 85 | 67.06% | 32.94% |
| Japonica Intermediate | 63 | 76.19% | 23.81% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702898417 | G->A | LOC_Os07g05984(LOC_Os07g05984.1) | Non-Synonymous SNP |