Detailed information of SNP:
|
SNP ID:
sf0702906787(Gbrowse)
Chromosome: chr07 Position: 2906787 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1311 | 73.76% | 26.24% |
| All Indica | 735 | 61.50% | 38.50% |
| All Japonica | 458 | 91.92% | 8.08% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 339 | 56.64% | 43.36% |
| Indica II | 193 | 61.14% | 38.86% |
| Indica Intermediate | 203 | 69.95% | 30.05% |
| Temperate Japonica | 310 | 99.35% | 0.65% |
| Tropical Japonica | 84 | 72.62% | 27.38% |
| Japonica Intermediate | 64 | 81.25% | 18.75% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 38 | 68.42% | 31.58% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702906787 | A->G | LOC_Os07g06010(LOC_Os07g06010.1) | INTRON |