Detailed information of SNP:
|
SNP ID:
sf0702976078(Gbrowse)
Chromosome: chr07 Position: 2976078 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1334 | 66.87% | 33.13% |
| All Indica | 762 | 59.19% | 40.81% |
| All Japonica | 452 | 76.33% | 23.67% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 356 | 64.33% | 35.67% |
| Indica II | 207 | 61.84% | 38.16% |
| Indica Intermediate | 199 | 47.24% | 52.76% |
| Temperate Japonica | 299 | 74.92% | 25.08% |
| Tropical Japonica | 88 | 75.00% | 25.00% |
| Japonica Intermediate | 65 | 84.62% | 15.38% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0702976078 | C->T | INTERGENIC | None |