Detailed information of SNP:
|
SNP ID:
sf0703259417(Gbrowse)
Chromosome: chr07 Position: 3259417 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.22% | 44.78% |
| All Indica | 798 | 88.85% | 11.15% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 87.20% | 12.80% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703259417 | T->A | LOC_Os07g06680(LOC_Os07g06680.1) | INTRON |