Detailed information of SNP:
|
SNP ID:
sf0703263097(Gbrowse)
Chromosome: chr07 Position: 3263097 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 55.72% | 44.28% |
| All Indica | 798 | 89.35% | 10.65% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703263097 | T->G | INTERGENIC | None |