Detailed information of SNP:
|
SNP ID:
sf0703277161(Gbrowse)
Chromosome: chr07 Position: 3277161 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 55.22% | 44.78% |
| All Indica | 785 | 22.55% | 77.45% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 27.15% | 72.85% |
| Indica II | 207 | 9.66% | 90.34% |
| Indica Intermediate | 206 | 27.18% | 72.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 35 | 62.86% | 37.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703277161 | C->T | INTERGENIC | None |