Detailed information of SNP:
|
SNP ID:
sf0703289613(Gbrowse)
Chromosome: chr07 Position: 3289613 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 53.25% | 46.75% |
| All Indica | 794 | 26.20% | 73.80% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 373 | 38.34% | 61.66% |
| Indica II | 213 | 3.29% | 96.71% |
| Indica Intermediate | 208 | 27.88% | 72.12% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703289613 | A->G | LOC_Os07g06740(LOC_Os07g06740.2) | INTRON |
| sf0703289613 | A->G | LOC_Os07g06740(LOC_Os07g06740.3) | INTRON |
| sf0703289613 | A->G | LOC_Os07g06740(LOC_Os07g06740.1) | INTRON |