Detailed information of SNP:
|
SNP ID:
sf0703329514(Gbrowse)
Chromosome: chr07 Position: 3329514 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 54.83% | 45.17% |
| All Indica | 798 | 88.60% | 11.40% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 87.17% | 12.83% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703329514 | G->A | INTERGENIC | None |