Detailed information of SNP:
|
SNP ID:
sf0703335670(Gbrowse)
Chromosome: chr07 Position: 3335670 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 56.25% | 43.75% |
| All Indica | 798 | 90.23% | 9.77% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703335670 | A->G | INTERGENIC | None |