Detailed information of SNP:
|
SNP ID:
sf0703335792(Gbrowse)
Chromosome: chr07 Position: 3335792 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 55.96% | 44.04% |
| All Indica | 799 | 90.11% | 9.89% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703335792 | T->A | INTERGENIC | None |