Detailed information of SNP:
|
SNP ID:
sf0703358541(Gbrowse)
Chromosome: chr07 Position: 3358541 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1310 | 96.64% | 3.36% |
| All Indica | 696 | 93.68% | 6.32% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 332 | 92.47% | 7.53% |
| Indica II | 171 | 98.83% | 1.17% |
| Indica Intermediate | 193 | 91.19% | 8.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703358541 | C->T | LOC_Os07g06870(LOC_Os07g06870.1) | Synonymous |