Detailed information of SNP:
|
SNP ID:
sf0703512651(Gbrowse)
Chromosome: chr07 Position: 3512651 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1304 | 84.89% | 15.11% |
| All Indica | 693 | 74.75% | 25.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 79.37% | 20.63% |
| Indica I | 353 | 92.07% | 7.93% |
| Indica II | 158 | 37.97% | 62.03% |
| Indica Intermediate | 182 | 73.08% | 26.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 78.38% | 21.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703512651 | C->T | INTERGENIC | None |