Detailed information of SNP:
|
SNP ID:
sf0703630747(Gbrowse)
Chromosome: chr07 Position: 3630747 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 87.30% | 12.70% |
| All Indica | 797 | 97.24% | 2.76% |
| All Japonica | 497 | 85.51% | 14.49% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 88.06% | 11.94% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0703630747 | A->G | INTERGENIC | None |